STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cre-eri-5CRE-ERI-5 protein. (534 aa)    
Predicted Functional Partners:
Cre-eri-1
CRE-ERI-1 protein.
    
 
 0.956
Cre-rrf-3
CRE-RRF-3 protein.
    
 
 0.944
Cre-eri-3
CRE-ERI-3 protein.
    
 
 0.890
CRE_30384
Uncharacterized protein.
    
 
 0.873
Cre-drh-3
CRE-DRH-3 protein.
    
 
 0.869
CRE_20299
RNase_Zc3h12a_2 domain-containing protein.
      
 0.789
Cre-crn-4
CRE-CRN-4 protein.
    
 
 0.743
Cre-rde-4
CRE-RDE-4 protein.
    
 
 0.722
Cre-dcr-1
CRE-DCR-1 protein; Belongs to the helicase family. Dicer subfamily.
    
 
 0.717
Cre-pir-1
CRE-PIR-1 protein.
    
 
 0.678
Your Current Organism:
Caenorhabditis remanei
NCBI taxonomy Id: 31234
Other names: C. remanei, Caenorhabditis vulgaris
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.