STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CRE_09960Uncharacterized protein. (114 aa)    
Predicted Functional Partners:
CRE_30646
DHFR domain-containing protein; Belongs to the dihydrofolate reductase family.
     
 0.653
CRE_29857
Uncharacterized protein.
  
  
 0.598
CRE_30337
Thioredoxin reductase.
     
 0.523
Cre-sqv-4
UDP-glucose 6-dehydrogenase; Involved in the biosynthesis of glycosaminoglycans; hyaluronan, chondroitin sulfate, and heparan sulfate. Belongs to the UDP-glucose/GDP-mannose dehydrogenase family.
  
  
 0.492
CRE_05879
Uncharacterized protein; Belongs to the GroES chaperonin family.
     
 0.468
CRE_19644
Uncharacterized protein; Belongs to the GroES chaperonin family.
     
 0.468
CRE_03593
HTH araC/xylS-type domain-containing protein.
  
  
 0.462
CRE_00603
Trifunctional purine biosynthetic protein adenosine-3; In the C-terminal section; belongs to the GART family. In the central section; belongs to the AIR synthase family.
     
 0.447
Cre-gale-1
UDP-glucose 4-epimerase; Belongs to the NAD(P)-dependent epimerase/dehydratase family.
     
 0.447
CRE_24759
BTB domain-containing protein.
     
 0.434
Your Current Organism:
Caenorhabditis remanei
NCBI taxonomy Id: 31234
Other names: C. remanei, Caenorhabditis vulgaris
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.