SMTD_LOCUS617 protein (Schistosoma mattheei)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

SMTD_LOCUS617

Uncharacterized protein. (132 aa)

Predicted Functional Partners:

SMTD_LOCUS469

0.679

A0A183P2E1

0.679

SMTD_LOCUS7894

0.559

SMTD_LOCUS852

0.548

A0A183NYG0

0.548

A0A183PWB1

0.548

A0A183PXP1

0.548

A0A183Q0S2

0.548

SMTD_LOCUS1080

0.547

SMTD_LOCUS2635

0.547

Your Current Organism:

Schistosoma mattheei

NCBI taxonomy Id: 31246
Other names: S. mattheei

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A183NYG0	SMTD_LOCUS617	A0A183NYG0	A0A183NET1	UCH_C domain-containing protein.	Uncharacterized protein.	0.548
A0A183NYG0	SMTD_LOCUS852	A0A183NYG0	A0A183NFG6	UCH_C domain-containing protein.	Uncharacterized protein.	0.608
A0A183P2E1	SMTD_LOCUS1080	A0A183P2E1	A0A183NG44	Uncharacterized protein.	Microtub_bind domain-containing protein.	0.403
A0A183P2E1	SMTD_LOCUS2635	A0A183P2E1	A0A183NKJ9	Uncharacterized protein.	Uncharacterized protein.	0.403
A0A183P2E1	SMTD_LOCUS617	A0A183P2E1	A0A183NET1	Uncharacterized protein.	Uncharacterized protein.	0.679
A0A183PWB1	SMTD_LOCUS617	A0A183PWB1	A0A183NET1	Uncharacterized protein.	Uncharacterized protein.	0.548
A0A183PXP1	SMTD_LOCUS617	A0A183PXP1	A0A183NET1	Ubiquitin carboxyl-terminal hydrolase.	Uncharacterized protein.	0.548
A0A183Q0S2	SMTD_LOCUS617	A0A183Q0S2	A0A183NET1	UCH_C domain-containing protein.	Uncharacterized protein.	0.548
SMTD_LOCUS1080	A0A183P2E1	A0A183NG44	A0A183P2E1	Microtub_bind domain-containing protein.	Uncharacterized protein.	0.403
SMTD_LOCUS1080	SMTD_LOCUS469	A0A183NG44	A0A183NED3	Microtub_bind domain-containing protein.	Uncharacterized protein.	0.403
SMTD_LOCUS1080	SMTD_LOCUS617	A0A183NG44	A0A183NET1	Microtub_bind domain-containing protein.	Uncharacterized protein.	0.547
SMTD_LOCUS2635	A0A183P2E1	A0A183NKJ9	A0A183P2E1	Uncharacterized protein.	Uncharacterized protein.	0.403
SMTD_LOCUS2635	SMTD_LOCUS469	A0A183NKJ9	A0A183NED3	Uncharacterized protein.	Uncharacterized protein.	0.403
SMTD_LOCUS2635	SMTD_LOCUS617	A0A183NKJ9	A0A183NET1	Uncharacterized protein.	Uncharacterized protein.	0.547
SMTD_LOCUS469	SMTD_LOCUS1080	A0A183NED3	A0A183NG44	Uncharacterized protein.	Microtub_bind domain-containing protein.	0.403
SMTD_LOCUS469	SMTD_LOCUS2635	A0A183NED3	A0A183NKJ9	Uncharacterized protein.	Uncharacterized protein.	0.403
SMTD_LOCUS469	SMTD_LOCUS617	A0A183NED3	A0A183NET1	Uncharacterized protein.	Uncharacterized protein.	0.679
SMTD_LOCUS617	A0A183NYG0	A0A183NET1	A0A183NYG0	Uncharacterized protein.	UCH_C domain-containing protein.	0.548
SMTD_LOCUS617	A0A183P2E1	A0A183NET1	A0A183P2E1	Uncharacterized protein.	Uncharacterized protein.	0.679
SMTD_LOCUS617	A0A183PWB1	A0A183NET1	A0A183PWB1	Uncharacterized protein.	Uncharacterized protein.	0.548