Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
SMTD_LOCUS3056UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family. (170 aa)    
Predicted Functional Partners:
SMTD_LOCUS8791
UBIQUITIN_CONJUGAT_2 domain-containing protein.
   
 0.965
A0A183PP22
Ubiquitin-like domain-containing protein.
   
 0.956
SMTD_LOCUS882
Uncharacterized protein.
    
 0.955
SMTD_LOCUS42
E3 ubiquitin-protein ligase; E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates.
   
 0.954
A0A183NDJ0
Uncharacterized protein.
    
 0.940
SMTD_LOCUS578
HECT domain-containing protein.
    
 0.940
SMTD_LOCUS7674
HECT domain-containing protein.
    
 0.940
A0A183PFA9
UBA_e1_C domain-containing protein.
   
 0.925
A0A183PKH9
Uncharacterized protein.
   
 0.925
SMTD_LOCUS6112
Uncharacterized protein.
    
 0.910
Your Current Organism:
Schistosoma mattheei
NCBI taxonomy Id: 31246
Other names: S. mattheei
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