A0A183NP50 protein (Schistosoma mattheei) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A183NP50

Uncharacterized protein. (95 aa)

Predicted Functional Partners:

A0A183Q0Q2

0.998

A0A183PQ60

0.984

SMTD_LOCUS3287

0.967

A0A183P458

0.967

A0A183P8R8

0.965

A0A183PE81

0.965

SMTD_LOCUS6761

0.959

SMTD_LOCUS6803

0.959

A0A183PG48

0.959

A0A183PHF6

0.959

Your Current Organism:

Schistosoma mattheei

NCBI taxonomy Id: 31246
Other names: S. mattheei

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A183NP50	A0A183P458	A0A183NP50	A0A183P458	Uncharacterized protein.	Vacuolar protein sorting-associated protein 16 homolog; Plays a role in vesicle-mediated protein trafficking to lysosomal compartments including the endocytic membrane transport and autophagic pathways. Believed to act as a core component of the putative HOPS and CORVET endosomal tethering complexes. Belongs to the VPS16 family.	0.967
A0A183NP50	A0A183P8R8	A0A183NP50	A0A183P8R8	Uncharacterized protein.	RING-type domain-containing protein.	0.965
A0A183NP50	A0A183PE81	A0A183NP50	A0A183PE81	Uncharacterized protein.	Uncharacterized protein.	0.965
A0A183NP50	A0A183PG48	A0A183NP50	A0A183PG48	Uncharacterized protein.	Uncharacterized protein.	0.959
A0A183NP50	A0A183PHF6	A0A183NP50	A0A183PHF6	Uncharacterized protein.	Uncharacterized protein.	0.959
A0A183NP50	A0A183PQ60	A0A183NP50	A0A183PQ60	Uncharacterized protein.	Uncharacterized protein.	0.984
A0A183NP50	A0A183Q0Q2	A0A183NP50	A0A183Q0Q2	Uncharacterized protein.	Uncharacterized protein.	0.998
A0A183NP50	SMTD_LOCUS3287	A0A183NP50	A0A183NMF1	Uncharacterized protein.	Vps16_N domain-containing protein.	0.967
A0A183NP50	SMTD_LOCUS6761	A0A183NP50	A0A183NXC5	Uncharacterized protein.	Uncharacterized protein; Belongs to the STXBP/unc-18/SEC1 family.	0.959
A0A183NP50	SMTD_LOCUS6803	A0A183NP50	A0A183NXG7	Uncharacterized protein.	Uncharacterized protein.	0.959
A0A183P458	A0A183NP50	A0A183P458	A0A183NP50	Vacuolar protein sorting-associated protein 16 homolog; Plays a role in vesicle-mediated protein trafficking to lysosomal compartments including the endocytic membrane transport and autophagic pathways. Believed to act as a core component of the putative HOPS and CORVET endosomal tethering complexes. Belongs to the VPS16 family.	Uncharacterized protein.	0.967
A0A183P458	A0A183P8R8	A0A183P458	A0A183P8R8	Vacuolar protein sorting-associated protein 16 homolog; Plays a role in vesicle-mediated protein trafficking to lysosomal compartments including the endocytic membrane transport and autophagic pathways. Believed to act as a core component of the putative HOPS and CORVET endosomal tethering complexes. Belongs to the VPS16 family.	RING-type domain-containing protein.	0.984
A0A183P458	A0A183PE81	A0A183P458	A0A183PE81	Vacuolar protein sorting-associated protein 16 homolog; Plays a role in vesicle-mediated protein trafficking to lysosomal compartments including the endocytic membrane transport and autophagic pathways. Believed to act as a core component of the putative HOPS and CORVET endosomal tethering complexes. Belongs to the VPS16 family.	Uncharacterized protein.	0.984
A0A183P458	A0A183PG48	A0A183P458	A0A183PG48	Vacuolar protein sorting-associated protein 16 homolog; Plays a role in vesicle-mediated protein trafficking to lysosomal compartments including the endocytic membrane transport and autophagic pathways. Believed to act as a core component of the putative HOPS and CORVET endosomal tethering complexes. Belongs to the VPS16 family.	Uncharacterized protein.	0.970
A0A183P458	A0A183PHF6	A0A183P458	A0A183PHF6	Vacuolar protein sorting-associated protein 16 homolog; Plays a role in vesicle-mediated protein trafficking to lysosomal compartments including the endocytic membrane transport and autophagic pathways. Believed to act as a core component of the putative HOPS and CORVET endosomal tethering complexes. Belongs to the VPS16 family.	Uncharacterized protein.	0.970
A0A183P458	A0A183PQ60	A0A183P458	A0A183PQ60	Vacuolar protein sorting-associated protein 16 homolog; Plays a role in vesicle-mediated protein trafficking to lysosomal compartments including the endocytic membrane transport and autophagic pathways. Believed to act as a core component of the putative HOPS and CORVET endosomal tethering complexes. Belongs to the VPS16 family.	Uncharacterized protein.	0.602
A0A183P458	A0A183Q0Q2	A0A183P458	A0A183Q0Q2	Vacuolar protein sorting-associated protein 16 homolog; Plays a role in vesicle-mediated protein trafficking to lysosomal compartments including the endocytic membrane transport and autophagic pathways. Believed to act as a core component of the putative HOPS and CORVET endosomal tethering complexes. Belongs to the VPS16 family.	Uncharacterized protein.	0.600
A0A183P458	SMTD_LOCUS6761	A0A183P458	A0A183NXC5	Vacuolar protein sorting-associated protein 16 homolog; Plays a role in vesicle-mediated protein trafficking to lysosomal compartments including the endocytic membrane transport and autophagic pathways. Believed to act as a core component of the putative HOPS and CORVET endosomal tethering complexes. Belongs to the VPS16 family.	Uncharacterized protein; Belongs to the STXBP/unc-18/SEC1 family.	0.994
A0A183P458	SMTD_LOCUS6803	A0A183P458	A0A183NXG7	Vacuolar protein sorting-associated protein 16 homolog; Plays a role in vesicle-mediated protein trafficking to lysosomal compartments including the endocytic membrane transport and autophagic pathways. Believed to act as a core component of the putative HOPS and CORVET endosomal tethering complexes. Belongs to the VPS16 family.	Uncharacterized protein.	0.970
A0A183P8R8	A0A183NP50	A0A183P8R8	A0A183NP50	RING-type domain-containing protein.	Uncharacterized protein.	0.965