A0A183NWX8 protein (Schistosoma mattheei) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A183NWX8

Helicase ATP-binding domain-containing protein. (589 aa)

Predicted Functional Partners:

A0A183PIG6

0.887

SMTD_LOCUS3526

0.882

SMTD_LOCUS7533

0.876

A0A183P9G4

0.871

A0A183PQZ4

0.870

A0A183PE49

0.868

A0A183PD75

0.863

SMTD_LOCUS2179

0.860

SMTD_LOCUS6259

0.859

A0A183PM74

0.858

Your Current Organism:

Schistosoma mattheei

NCBI taxonomy Id: 31246
Other names: S. mattheei

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A183NWX8	A0A183P9G4	A0A183NWX8	A0A183P9G4	Helicase ATP-binding domain-containing protein.	Uncharacterized protein.	0.871
A0A183NWX8	A0A183PD75	A0A183NWX8	A0A183PD75	Helicase ATP-binding domain-containing protein.	Uncharacterized protein.	0.863
A0A183NWX8	A0A183PE49	A0A183NWX8	A0A183PE49	Helicase ATP-binding domain-containing protein.	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	0.868
A0A183NWX8	A0A183PIG6	A0A183NWX8	A0A183PIG6	Helicase ATP-binding domain-containing protein.	Sas10 domain-containing protein.	0.887
A0A183NWX8	A0A183PM74	A0A183NWX8	A0A183PM74	Helicase ATP-binding domain-containing protein.	Uncharacterized protein.	0.858
A0A183NWX8	A0A183PQZ4	A0A183NWX8	A0A183PQZ4	Helicase ATP-binding domain-containing protein.	Uncharacterized protein.	0.870
A0A183NWX8	SMTD_LOCUS2179	A0A183NWX8	A0A183NJ94	Helicase ATP-binding domain-containing protein.	S4 RNA-binding domain-containing protein.	0.860
A0A183NWX8	SMTD_LOCUS3526	A0A183NWX8	A0A183NN40	Helicase ATP-binding domain-containing protein.	MI domain-containing protein.	0.882
A0A183NWX8	SMTD_LOCUS6259	A0A183NWX8	A0A183NVX3	Helicase ATP-binding domain-containing protein.	Nucleolar protein 6.	0.859
A0A183NWX8	SMTD_LOCUS7533	A0A183NWX8	A0A183NZJ9	Helicase ATP-binding domain-containing protein.	Uncharacterized protein.	0.876
A0A183P9G4	A0A183NWX8	A0A183P9G4	A0A183NWX8	Uncharacterized protein.	Helicase ATP-binding domain-containing protein.	0.871
A0A183P9G4	A0A183PD75	A0A183P9G4	A0A183PD75	Uncharacterized protein.	Uncharacterized protein.	0.999
A0A183P9G4	A0A183PE49	A0A183P9G4	A0A183PE49	Uncharacterized protein.	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	0.999
A0A183P9G4	A0A183PIG6	A0A183P9G4	A0A183PIG6	Uncharacterized protein.	Sas10 domain-containing protein.	0.999
A0A183P9G4	A0A183PQZ4	A0A183P9G4	A0A183PQZ4	Uncharacterized protein.	Uncharacterized protein.	0.637
A0A183P9G4	SMTD_LOCUS2179	A0A183P9G4	A0A183NJ94	Uncharacterized protein.	S4 RNA-binding domain-containing protein.	0.995
A0A183P9G4	SMTD_LOCUS6259	A0A183P9G4	A0A183NVX3	Uncharacterized protein.	Nucleolar protein 6.	0.999
A0A183PD75	A0A183NWX8	A0A183PD75	A0A183NWX8	Uncharacterized protein.	Helicase ATP-binding domain-containing protein.	0.863
A0A183PD75	A0A183P9G4	A0A183PD75	A0A183P9G4	Uncharacterized protein.	Uncharacterized protein.	0.999
A0A183PD75	A0A183PE49	A0A183PD75	A0A183PE49	Uncharacterized protein.	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	0.999