STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
echA8_2Putative enoyl-CoA hydratase echA8. (258 aa)    
Predicted Functional Partners:
mmgB
Putative 3-hydroxybutyryl-CoA dehydrogenase.
 0.992
arcB
Aerobic respiration control sensor protein ArcB.
    
 0.966
lcdH
L-carnitine dehydrogenase.
 
  0.837
paaG_2
1,2-epoxyphenylacetyl-CoA isomerase.
 
 
0.824
paaG_1
1,2-epoxyphenylacetyl-CoA isomerase; Belongs to the enoyl-CoA hydratase/isomerase family.
 
 
0.823
rpsI
30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.
    
   0.813
rpsP
30S ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.
    
   0.812
rpmG
Hypothetical protein; RRP-L33; Belongs to the bacterial ribosomal protein bL33 family.
    
   0.810
rpmJ
Hypothetical protein; RRP-L36; Belongs to the bacterial ribosomal protein bL36 family.
    
   0.810
rplQ
50S ribosomal protein L17.
    
   0.809
Your Current Organism:
Jannaschia seosinensis
NCBI taxonomy Id: 313367
Other names: J. seosinensis, JCM 13035, Jannaschia seosinensis Choi et al. 2006, Jannaschia sp. CL-SP26, KCCM 42114, strain CL-SP26
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