STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
luxAAlkanal monooxygenase alpha chain. (335 aa)    
Predicted Functional Partners:
paaE
1,2-phenylacetyl-CoA epoxidase, subunit E.
   
 
 0.811
fdr
Ferredoxin--NAD(P)(+) reductase fdr.
  
 
 0.756
preA
NAD-dependent dihydropyrimidine dehydrogenase subunit PreA.
    
  0.733
CUH39723.1
Putative thiamine biosynthesis protein.
  
 
 0.701
CUH40560.1
Putative thiamine biosynthesis protein.
  
 
 0.701
gcvT_1
Aminomethyltransferase; Belongs to the GcvT family.
   
 
 0.697
CUH39156.1
Flavin reductase like domain protein.
  
 
 0.573
rutF
FMN reductase (NADH) RutF.
  
 
 0.573
ttrA
Tetrathionate reductase subunit A precursor; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
   
 
 0.556
opuCA
Carnitine transport ATP-binding protein OpuCA.
  
 
 0.537
Your Current Organism:
Jannaschia seosinensis
NCBI taxonomy Id: 313367
Other names: J. seosinensis, JCM 13035, Jannaschia seosinensis Choi et al. 2006, Jannaschia sp. CL-SP26, KCCM 42114, strain CL-SP26
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