STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUH39303.1Hypothetical protein. (68 aa)    
Predicted Functional Partners:
CUH39305.1
Hypothetical protein.
 
     0.956
rhlE_2
ATP-dependent RNA helicase RhlE.
 
     0.946
CUH39300.1
Hypothetical protein.
 
     0.926
CUH39304.1
PD-(D/E)XK nuclease superfamily protein.
 
     0.920
CUH39302.1
Hypothetical protein.
       0.816
CUH39299.1
Hypothetical protein.
 
     0.788
CUH39307.1
Hypothetical protein.
 
     0.720
CUH39308.1
Hypothetical protein.
 
     0.680
CUH38900.1
Hef nuclease.
 
     0.640
CUH39306.1
Hypothetical protein.
 
     0.631
Your Current Organism:
Jannaschia seosinensis
NCBI taxonomy Id: 313367
Other names: J. seosinensis, JCM 13035, Jannaschia seosinensis Choi et al. 2006, Jannaschia sp. CL-SP26, KCCM 42114, strain CL-SP26
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.