STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUH39931.1TRAP-type C4-dicarboxylate transport system, small permease component. (194 aa)    
Predicted Functional Partners:
siaP_4
Neu5Ac-binding protein.
 
    0.941
siaT_9
Neu5Ac permease.
 
  0.937
msmE
Multiple sugar-binding protein precursor.
  
     0.574
budC
L-2,3-butanediol dehydrogenase.
 
     0.523
dgoA_2
2-dehydro-3-deoxy-6-phosphogalactonate aldolase.
 
     0.522
kdgR
Transcriptional regulator KdgR.
 
     0.500
siaT_1
Neu5Ac permease.
  
  0.468
CUH22374.1
Beta-galactosidase.
  
     0.468
siaT_2
Neu5Ac permease.
  
  0.468
siaT_5
Neu5Ac permease.
  
  0.468
Your Current Organism:
Jannaschia seosinensis
NCBI taxonomy Id: 313367
Other names: J. seosinensis, JCM 13035, Jannaschia seosinensis Choi et al. 2006, Jannaschia sp. CL-SP26, KCCM 42114, strain CL-SP26
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.