STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUH40608.1AhpC/TSA family protein. (175 aa)    
Predicted Functional Partners:
rluE
Ribosomal large subunit pseudouridine synthase E; Belongs to the pseudouridine synthase RsuA family.
 
     0.615
flgC
Putative proximal rod protein; Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body.
    
   0.556
ribD
Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family.
     
 0.531
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
     
 0.505
CUH39696.1
Hypothetical protein.
  
     0.455
CUH29230.1
Exosortase A system-associated hydrolase 2.
 
    0.443
hom
Homoserine dehydrogenase.
    
  0.430
yfdC
Inner membrane protein YfdC.
 
   
 0.420
cysK
Cysteine synthase.
    
 0.415
trxA_1
Thioredoxin; Belongs to the thioredoxin family.
   
 
 0.402
Your Current Organism:
Jannaschia seosinensis
NCBI taxonomy Id: 313367
Other names: J. seosinensis, JCM 13035, Jannaschia seosinensis Choi et al. 2006, Jannaschia sp. CL-SP26, KCCM 42114, strain CL-SP26
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