STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUH40701.1Hypothetical protein. (162 aa)    
Predicted Functional Partners:
CUH40702.1
DNA polymerase III subunit delta.
 
    0.937
CUH40699.1
Hypothetical protein.
 
     0.898
leuS
Leucine--tRNA ligase; Belongs to the class-I aminoacyl-tRNA synthetase family.
       0.856
CUH14095.1
Hypothetical protein.
  
     0.737
CUH39915.1
Lipopolysaccharide-assembly, LptC-related.
  
     0.729
CUH26738.1
Hypothetical protein.
  
     0.711
CUH36084.1
Hypothetical protein.
  
     0.699
CUH40294.1
Cytoskeletal protein RodZ.
  
     0.696
CUH40703.1
Hypothetical protein.
       0.690
CUH38869.1
Helicase, RecD/TraA family.
  
     0.679
Your Current Organism:
Jannaschia seosinensis
NCBI taxonomy Id: 313367
Other names: J. seosinensis, JCM 13035, Jannaschia seosinensis Choi et al. 2006, Jannaschia sp. CL-SP26, KCCM 42114, strain CL-SP26
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.