Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SHI46109.1 | hemH | SAMN04488012_101429 | SAMN04488012_102131 | Multicopper oxidase with three cupredoxin domains (includes cell division protein FtsP and spore coat protein CotA). | Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family. | 0.787 |
SHI46456.1 | hemH | SAMN04488012_101440 | SAMN04488012_102131 | Multicopper oxidase with three cupredoxin domains (includes cell division protein FtsP and spore coat protein CotA). | Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family. | 0.787 |
SHI64756.1 | SHI68402.1 | SAMN04488012_102165 | SAMN04488012_102265 | Putative membrane protein. | Protoporphyrin IX magnesium-chelatase; Involved in bacteriochlorophyll biosynthesis; introduces a magnesium ion into protoporphyrin IX to yield Mg-protoporphyrin IX. | 0.851 |
SHI64756.1 | hemE | SAMN04488012_102165 | SAMN04488012_103181 | Putative membrane protein. | Uroporphyrinogen decarboxylase; Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III. | 0.676 |
SHI64756.1 | hemH | SAMN04488012_102165 | SAMN04488012_102131 | Putative membrane protein. | Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family. | 0.926 |
SHI67829.1 | SHI68363.1 | SAMN04488012_102249 | SAMN04488012_102264 | HemY protein. | Protoporphyrin IX magnesium-chelatase. | 0.435 |
SHI67829.1 | SHI68402.1 | SAMN04488012_102249 | SAMN04488012_102265 | HemY protein. | Protoporphyrin IX magnesium-chelatase; Involved in bacteriochlorophyll biosynthesis; introduces a magnesium ion into protoporphyrin IX to yield Mg-protoporphyrin IX. | 0.539 |
SHI67829.1 | hemH | SAMN04488012_102249 | SAMN04488012_102131 | HemY protein. | Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family. | 0.778 |
SHI68363.1 | SHI67829.1 | SAMN04488012_102264 | SAMN04488012_102249 | Protoporphyrin IX magnesium-chelatase. | HemY protein. | 0.435 |
SHI68363.1 | SHI68402.1 | SAMN04488012_102264 | SAMN04488012_102265 | Protoporphyrin IX magnesium-chelatase. | Protoporphyrin IX magnesium-chelatase; Involved in bacteriochlorophyll biosynthesis; introduces a magnesium ion into protoporphyrin IX to yield Mg-protoporphyrin IX. | 0.999 |
SHI68363.1 | hemE | SAMN04488012_102264 | SAMN04488012_103181 | Protoporphyrin IX magnesium-chelatase. | Uroporphyrinogen decarboxylase; Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III. | 0.421 |
SHI68363.1 | hemH | SAMN04488012_102264 | SAMN04488012_102131 | Protoporphyrin IX magnesium-chelatase. | Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family. | 0.910 |
SHI68402.1 | SHI64756.1 | SAMN04488012_102265 | SAMN04488012_102165 | Protoporphyrin IX magnesium-chelatase; Involved in bacteriochlorophyll biosynthesis; introduces a magnesium ion into protoporphyrin IX to yield Mg-protoporphyrin IX. | Putative membrane protein. | 0.851 |
SHI68402.1 | SHI67829.1 | SAMN04488012_102265 | SAMN04488012_102249 | Protoporphyrin IX magnesium-chelatase; Involved in bacteriochlorophyll biosynthesis; introduces a magnesium ion into protoporphyrin IX to yield Mg-protoporphyrin IX. | HemY protein. | 0.539 |
SHI68402.1 | SHI68363.1 | SAMN04488012_102265 | SAMN04488012_102264 | Protoporphyrin IX magnesium-chelatase; Involved in bacteriochlorophyll biosynthesis; introduces a magnesium ion into protoporphyrin IX to yield Mg-protoporphyrin IX. | Protoporphyrin IX magnesium-chelatase. | 0.999 |
SHI68402.1 | hemH | SAMN04488012_102265 | SAMN04488012_102131 | Protoporphyrin IX magnesium-chelatase; Involved in bacteriochlorophyll biosynthesis; introduces a magnesium ion into protoporphyrin IX to yield Mg-protoporphyrin IX. | Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family. | 0.887 |
SHI74675.1 | hemH | SAMN04488012_102458 | SAMN04488012_102131 | Menaquinone-dependent protoporphyrinogen oxidase. | Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family. | 0.867 |
SHJ49236.1 | hemH | SAMN04488012_11074 | SAMN04488012_102131 | MFS transporter, DHA1 family, tetracycline resistance protein. | Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family. | 0.800 |
ctaB | hemE | SAMN04488012_105156 | SAMN04488012_103181 | Protoheme IX farnesyltransferase; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group; Belongs to the UbiA prenyltransferase family. Protoheme IX farnesyltransferase subfamily. | Uroporphyrinogen decarboxylase; Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III. | 0.485 |
ctaB | hemH | SAMN04488012_105156 | SAMN04488012_102131 | Protoheme IX farnesyltransferase; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group; Belongs to the UbiA prenyltransferase family. Protoheme IX farnesyltransferase subfamily. | Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family. | 0.905 |
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