Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
SHI72932.1Protein of unknown function. (176 aa)    
Predicted Functional Partners:
SHJ55100.1
Beta-barrel assembly machine subunit BamF.
  
     0.769
SHI37963.1
Beta-barrel assembly machine subunit BamE.
  
     0.750
SHI47759.1
Hypothetical protein.
  
     0.725
leuS
leucyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
    0.660
SHI87269.1
Ubiquinone biosynthesis protein COQ9.
  
     0.646
SHI72843.1
LPS-assembly lipoprotein.
 
     0.644
SHJ07656.1
Penicillin-binding protein 2.
  
     0.632
SHI72995.1
Outer membrane protein OmpU.
 
     0.627
SHI47592.1
Outer membrane protein assembly factor BamB, contains PQQ-like beta-propeller repeat.
  
     0.575
SHJ65779.1
Haem-NO-binding.
  
     0.574
Your Current Organism:
Maribius salinus
NCBI taxonomy Id: 313368
Other names: DSM 26892, JCM 13037, KCCM 42113, M. salinus, Maribius salinus Choi et al. 2007, Palleronia salina, Rhodobacteraceae bacterium CL-SP27, strain CL-SP27
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