STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHI87122.1Hypothetical protein. (344 aa)    
Predicted Functional Partners:
greA
Transcription elongation factor GreA; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides.
       0.787
SHJ24601.1
Exodeoxyribonuclease-5.
  
     0.769
SHI37366.1
Protein RodZ, contains Xre-like HTH and DUF4115 domains.
  
     0.762
SHJ07769.1
SseB protein N-terminal domain-containing protein.
  
     0.761
SHJ22475.1
Hypothetical protein.
  
     0.761
SHI48351.1
Hypothetical protein.
  
     0.757
SHJ36290.1
Hypothetical protein.
  
     0.756
SHI89913.1
Flp pilus assembly protein TadD, contains TPR repeats.
  
     0.751
SHJ55100.1
Beta-barrel assembly machine subunit BamF.
  
     0.748
SHJ21722.1
Rhomboid family protein.
  
     0.734
Your Current Organism:
Maribius salinus
NCBI taxonomy Id: 313368
Other names: DSM 26892, JCM 13037, KCCM 42113, M. salinus, Maribius salinus Choi et al. 2007, Palleronia salina, Rhodobacteraceae bacterium CL-SP27, strain CL-SP27
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.