STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHI89947.1TPR repeat-containing protein. (187 aa)    
Predicted Functional Partners:
SHI90009.1
Tight adherence protein B.
 
  
 0.963
SHI90075.1
Pilus assembly protein CpaE.
 
  
 0.960
SHI89892.1
Prepilin peptidase CpaA.
 
   
 0.949
SHI89913.1
Flp pilus assembly protein TadD, contains TPR repeats.
 
     0.947
SHI89979.1
Tight adherence protein C.
 
  
 0.944
SHI90041.1
Pilus assembly protein CpaF.
 
  
 0.890
SHI90136.1
Pilus assembly protein CpaC; Belongs to the bacterial secretin family.
 
  
 0.885
SHI90166.1
Pilus assembly protein CpaB.
 
  
 0.842
SHI89822.1
Hypothetical protein.
 
     0.822
SHI90240.1
Hypothetical protein.
 
     0.806
Your Current Organism:
Maribius salinus
NCBI taxonomy Id: 313368
Other names: DSM 26892, JCM 13037, KCCM 42113, M. salinus, Maribius salinus Choi et al. 2007, Palleronia salina, Rhodobacteraceae bacterium CL-SP27, strain CL-SP27
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.