STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHI84247.1Lytic murein transglycosylase. (412 aa)    
Predicted Functional Partners:
SHI84203.1
TRAP transporter, 4TM/12TM fusion protein.
       0.553
SHJ01339.1
Alginate biosynthesis protein AlgX.
  
     0.494
SHI38780.1
Glucokinase; Belongs to the bacterial glucokinase family.
  
  
  0.464
SHJ01272.1
TPR repeat.
  
     0.455
SHI84282.1
Phosphonate transport system substrate-binding protein.
       0.443
SHJ01576.1
Glycosyltransferase Alg8.
  
     0.412
Your Current Organism:
Maribius salinus
NCBI taxonomy Id: 313368
Other names: DSM 26892, JCM 13037, KCCM 42113, M. salinus, Maribius salinus Choi et al. 2007, Palleronia salina, Rhodobacteraceae bacterium CL-SP27, strain CL-SP27
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.