STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHJ01238.1poly(beta-D-mannuronate) lyase. (338 aa)    
Predicted Functional Partners:
SHJ01476.1
Right handed beta helix region.
    
  0.899
SHJ01272.1
TPR repeat.
  
 
  0.800
SHJ01339.1
Alginate biosynthesis protein AlgX.
  
 
  0.743
SHJ01414.1
Alginate O-acetyltransferase complex protein AlgJ.
  
 
  0.738
SHJ01538.1
HlyD family secretion protein.
  
 
  0.733
SHJ01576.1
Glycosyltransferase Alg8.
  
  
 0.709
SHJ01447.1
Alginate O-acetyltransferase complex protein AlgI; Belongs to the membrane-bound acyltransferase family.
  
    0.695
SHJ01507.1
Mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase.
  
    0.686
SHJ01304.1
Alginate O-acetyltransferase complex protein AlgF.
       0.685
SHJ01375.1
Hypothetical protein.
       0.685
Your Current Organism:
Maribius salinus
NCBI taxonomy Id: 313368
Other names: DSM 26892, JCM 13037, KCCM 42113, M. salinus, Maribius salinus Choi et al. 2007, Palleronia salina, Rhodobacteraceae bacterium CL-SP27, strain CL-SP27
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.