Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| SHI87494.1 | truA | SAMN04488012_103178 | SAMN04488012_1098 | Biotin transport system permease protein. | tRNA pseudouridine38-40 synthase; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs. | 0.765 |
| SHJ22446.1 | SHJ25610.1 | SAMN04488012_10642 | SAMN04488012_106143 | Protein-tyrosine phosphatase; Belongs to the low molecular weight phosphotyrosine protein phosphatase family. | Hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase. | 0.551 |
| SHJ22446.1 | rsmH | SAMN04488012_10642 | SAMN04488012_1213 | Protein-tyrosine phosphatase; Belongs to the low molecular weight phosphotyrosine protein phosphatase family. | 16S rRNA (cytosine1402-N4)-methyltransferase; Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA. | 0.882 |
| SHJ22446.1 | truA | SAMN04488012_10642 | SAMN04488012_1098 | Protein-tyrosine phosphatase; Belongs to the low molecular weight phosphotyrosine protein phosphatase family. | tRNA pseudouridine38-40 synthase; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs. | 0.883 |
| SHJ22446.1 | ybeY | SAMN04488012_10642 | SAMN04488012_11057 | Protein-tyrosine phosphatase; Belongs to the low molecular weight phosphotyrosine protein phosphatase family. | Probable rRNA maturation factor; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA. | 0.889 |
| SHJ25610.1 | SHJ22446.1 | SAMN04488012_106143 | SAMN04488012_10642 | Hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase. | Protein-tyrosine phosphatase; Belongs to the low molecular weight phosphotyrosine protein phosphatase family. | 0.551 |
| SHJ25610.1 | truA | SAMN04488012_106143 | SAMN04488012_1098 | Hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase. | tRNA pseudouridine38-40 synthase; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs. | 0.688 |
| accD | truA | SAMN04488012_10236 | SAMN04488012_1098 | acetyl-CoA carboxylase carboxyltransferase subunit alpha; Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl-CoA; Belongs to the AccD/PCCB family. | tRNA pseudouridine38-40 synthase; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs. | 0.738 |
| rplQ | rpoA | SAMN04488012_10538 | SAMN04488012_10537 | LSU ribosomal protein L17P. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.998 |
| rplQ | rpoC | SAMN04488012_10538 | SAMN04488012_102501 | LSU ribosomal protein L17P. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.999 |
| rplQ | truA | SAMN04488012_10538 | SAMN04488012_1098 | LSU ribosomal protein L17P. | tRNA pseudouridine38-40 synthase; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs. | 0.956 |
| rplQ | truB | SAMN04488012_10538 | SAMN04488012_11157 | LSU ribosomal protein L17P. | tRNA pseudouridine synthase B; Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 1 subfamily. | 0.844 |
| rplQ | ybeY | SAMN04488012_10538 | SAMN04488012_11057 | LSU ribosomal protein L17P. | Probable rRNA maturation factor; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA. | 0.965 |
| rpoA | rplQ | SAMN04488012_10537 | SAMN04488012_10538 | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | LSU ribosomal protein L17P. | 0.998 |
| rpoA | rpoC | SAMN04488012_10537 | SAMN04488012_102501 | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.999 |
| rpoA | truA | SAMN04488012_10537 | SAMN04488012_1098 | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | tRNA pseudouridine38-40 synthase; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs. | 0.938 |
| rpoA | truB | SAMN04488012_10537 | SAMN04488012_11157 | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | tRNA pseudouridine synthase B; Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 1 subfamily. | 0.745 |
| rpoC | rplQ | SAMN04488012_102501 | SAMN04488012_10538 | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | LSU ribosomal protein L17P. | 0.999 |
| rpoC | rpoA | SAMN04488012_102501 | SAMN04488012_10537 | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.999 |
| rpoC | truA | SAMN04488012_102501 | SAMN04488012_1098 | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | tRNA pseudouridine38-40 synthase; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs. | 0.745 |
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