STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHJ53587.1TRAP transporter, DctM subunit. (461 aa)    
Predicted Functional Partners:
SHJ53664.1
TRAP-type C4-dicarboxylate transport system, substrate-binding protein.
 
 
  0.958
SHJ53625.1
TRAP-type C4-dicarboxylate transport system, small permease component.
 
  0.945
SHJ49823.1
TRAP-type C4-dicarboxylate transport system, substrate-binding protein.
 
 
  0.860
SHJ73873.1
TRAP-type C4-dicarboxylate transport system, small permease component.
  
 0.849
SHJ03682.1
TRAP-type C4-dicarboxylate transport system, small permease component.
  
  0.825
SHJ13618.1
Tripartite ATP-independent transporter, DctQ component.
   
  0.822
SHJ70765.1
TRAP-type C4-dicarboxylate transport system, small permease component.
  
  0.817
SHJ25381.1
TRAP-type mannitol/chloroaromatic compound transport system, substrate-binding protein.
  
  
  0.815
SHI39079.1
TRAP-type mannitol/chloroaromatic compound transport system, small permease component.
   
  0.814
SHJ16582.1
Tripartite ATP-independent transporter solute receptor, DctP family.
  
 
  0.811
Your Current Organism:
Maribius salinus
NCBI taxonomy Id: 313368
Other names: DSM 26892, JCM 13037, KCCM 42113, M. salinus, Maribius salinus Choi et al. 2007, Palleronia salina, Rhodobacteraceae bacterium CL-SP27, strain CL-SP27
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.