STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHJ59123.1Hypothetical protein. (112 aa)    
Predicted Functional Partners:
SHJ04726.1
Lactoylglutathione lyase.
   
    0.844
SHJ59088.1
Hypothetical protein.
       0.773
rpoD
RNA polymerase, sigma 70 subunit, RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
       0.623
SHJ04288.1
Phasin protein.
  
     0.618
SHI88359.1
Uncharacterized membrane protein.
  
     0.573
SHI89947.1
TPR repeat-containing protein.
  
     0.526
SHI90240.1
Hypothetical protein.
  
     0.485
SHI89892.1
Prepilin peptidase CpaA.
  
     0.479
SHJ39334.1
Hypothetical protein.
  
     0.477
SHI49541.1
Isochorismate pyruvate lyase.
  
     0.464
Your Current Organism:
Maribius salinus
NCBI taxonomy Id: 313368
Other names: DSM 26892, JCM 13037, KCCM 42113, M. salinus, Maribius salinus Choi et al. 2007, Palleronia salina, Rhodobacteraceae bacterium CL-SP27, strain CL-SP27
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.