STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHJ62174.1TRAP-type mannitol/chloroaromatic compound transport system, small permease component. (182 aa)    
Predicted Functional Partners:
SHJ62209.1
TRAP transporter, DctM subunit.
 
 
  0.988
SHJ62231.1
TRAP-type mannitol/chloroaromatic compound transport system, substrate-binding protein.
 
  
  0.985
SHJ62138.1
Predicted N-formylglutamate amidohydrolase.
 
     0.944
SHJ62105.1
Transcriptional regulator, RpiR family.
 
     0.917
SHI74516.1
TRAP transporter, DctM subunit.
 
 
  0.852
SHJ62303.1
Acyl-CoA reductase.
 
     0.848
SHJ74176.1
TRAP transporter, DctM subunit.
 
 
  0.848
SHI50237.1
Tat (twin-arginine translocation) pathway signal sequence; Part of the tripartite ATP-independent periplasmic (TRAP) transport system.
 
 
  0.843
SHJ18253.1
TRAP-type mannitol/chloroaromatic compound transport system, substrate-binding protein; Part of the tripartite ATP-independent periplasmic (TRAP) transport system.
 
 
  0.843
SHJ18197.1
TRAP transporter, DctM subunit.
 
 
  0.842
Your Current Organism:
Maribius salinus
NCBI taxonomy Id: 313368
Other names: DSM 26892, JCM 13037, KCCM 42113, M. salinus, Maribius salinus Choi et al. 2007, Palleronia salina, Rhodobacteraceae bacterium CL-SP27, strain CL-SP27
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