Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SHI46269.1 | SHJ14971.1 | SAMN04488012_101434 | SAMN04488012_105138 | EF hand. | Cytochrome c. | 0.478 |
SHI46269.1 | SHJ77725.1 | SAMN04488012_101434 | SAMN04488012_11922 | EF hand. | PLD-like domain-containing protein. | 0.732 |
SHI46269.1 | polA | SAMN04488012_101434 | SAMN04488012_10940 | EF hand. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.625 |
SHJ14971.1 | SHI46269.1 | SAMN04488012_105138 | SAMN04488012_101434 | Cytochrome c. | EF hand. | 0.478 |
SHJ14971.1 | SHJ77725.1 | SAMN04488012_105138 | SAMN04488012_11922 | Cytochrome c. | PLD-like domain-containing protein. | 0.817 |
SHJ14971.1 | polA | SAMN04488012_105138 | SAMN04488012_10940 | Cytochrome c. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.512 |
SHJ14971.1 | rpoA | SAMN04488012_105138 | SAMN04488012_10537 | Cytochrome c. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.912 |
SHJ14971.1 | rpoB | SAMN04488012_105138 | SAMN04488012_102500 | Cytochrome c. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.938 |
SHJ14971.1 | rpoZ | SAMN04488012_105138 | SAMN04488012_105121 | Cytochrome c. | DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.909 |
SHJ42250.1 | SHJ77725.1 | SAMN04488012_10934 | SAMN04488012_11922 | Diadenosine tetraphosphate (Ap4A) hydrolase. | PLD-like domain-containing protein. | 0.815 |
SHJ42250.1 | rpoB | SAMN04488012_10934 | SAMN04488012_102500 | Diadenosine tetraphosphate (Ap4A) hydrolase. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.859 |
SHJ42250.1 | rpoC | SAMN04488012_10934 | SAMN04488012_102501 | Diadenosine tetraphosphate (Ap4A) hydrolase. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.903 |
SHJ42250.1 | rpoZ | SAMN04488012_10934 | SAMN04488012_105121 | Diadenosine tetraphosphate (Ap4A) hydrolase. | DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.860 |
SHJ42366.1 | SHJ77725.1 | SAMN04488012_10938 | SAMN04488012_11922 | Hypothetical protein. | PLD-like domain-containing protein. | 0.815 |
SHJ42366.1 | polA | SAMN04488012_10938 | SAMN04488012_10940 | Hypothetical protein. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.660 |
SHJ42366.1 | rpoA | SAMN04488012_10938 | SAMN04488012_10537 | Hypothetical protein. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.912 |
SHJ42366.1 | rpoB | SAMN04488012_10938 | SAMN04488012_102500 | Hypothetical protein. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.913 |
SHJ42366.1 | rpoZ | SAMN04488012_10938 | SAMN04488012_105121 | Hypothetical protein. | DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.906 |
SHJ77705.1 | SHJ77725.1 | SAMN04488012_11921 | SAMN04488012_11922 | Methyltransferase domain-containing protein. | PLD-like domain-containing protein. | 0.976 |
SHJ77725.1 | SHI46269.1 | SAMN04488012_11922 | SAMN04488012_101434 | PLD-like domain-containing protein. | EF hand. | 0.732 |
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