node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
JNB_00860 | JNB_00880 | JNB_00860 | JNB_00880 | Putative ATP-binding protein; COG3451 Type IV secretory pathway, VirB4 components. | Putative membrane protein; COG3505 Type IV secretory pathway, VirD4 components. | 0.910 |
JNB_00860 | JNB_00995 | JNB_00860 | JNB_00995 | Putative ATP-binding protein; COG3451 Type IV secretory pathway, VirB4 components. | Transfer protein Tra-like; COG0507 ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member. | 0.860 |
JNB_00860 | topA | JNB_00860 | JNB_09584 | Putative ATP-binding protein; COG3451 Type IV secretory pathway, VirB4 components. | Putative DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing [...] | 0.457 |
JNB_00880 | JNB_00860 | JNB_00880 | JNB_00860 | Putative membrane protein; COG3505 Type IV secretory pathway, VirD4 components. | Putative ATP-binding protein; COG3451 Type IV secretory pathway, VirB4 components. | 0.910 |
JNB_00880 | JNB_00995 | JNB_00880 | JNB_00995 | Putative membrane protein; COG3505 Type IV secretory pathway, VirD4 components. | Transfer protein Tra-like; COG0507 ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member. | 0.833 |
JNB_00995 | JNB_00860 | JNB_00995 | JNB_00860 | Transfer protein Tra-like; COG0507 ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member. | Putative ATP-binding protein; COG3451 Type IV secretory pathway, VirB4 components. | 0.860 |
JNB_00995 | JNB_00880 | JNB_00995 | JNB_00880 | Transfer protein Tra-like; COG0507 ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member. | Putative membrane protein; COG3505 Type IV secretory pathway, VirD4 components. | 0.833 |
JNB_00995 | JNB_01505 | JNB_00995 | JNB_01505 | Transfer protein Tra-like; COG0507 ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member. | Hypothetical protein; COG0847 DNA polymerase III, epsilon subunit and related 3'-5' exonucleases. | 0.856 |
JNB_00995 | JNB_07399 | JNB_00995 | JNB_07399 | Transfer protein Tra-like; COG0507 ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member. | COG0210 Superfamily I DNA and RNA helicases. | 0.994 |
JNB_00995 | JNB_13403 | JNB_00995 | JNB_13403 | Transfer protein Tra-like; COG0507 ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member. | DNA polymerase III subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.936 |
JNB_00995 | JNB_13948 | JNB_00995 | JNB_13948 | Transfer protein Tra-like; COG0507 ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member. | Putative replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity. Belongs to the helicase family. DnaB subfamily. | 0.984 |
JNB_00995 | polA | JNB_00995 | JNB_03775 | Transfer protein Tra-like; COG0507 ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member. | Putative DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.965 |
JNB_00995 | rph | JNB_00995 | JNB_06259 | Transfer protein Tra-like; COG0507 ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member. | Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | 0.923 |
JNB_00995 | topA | JNB_00995 | JNB_09584 | Transfer protein Tra-like; COG0507 ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member. | Putative DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing [...] | 0.872 |
JNB_00995 | truB | JNB_00995 | JNB_20343 | Transfer protein Tra-like; COG0507 ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member. | tRNA pseudouridine synthase B; Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 1 subfamily. | 0.904 |
JNB_01505 | JNB_00995 | JNB_01505 | JNB_00995 | Hypothetical protein; COG0847 DNA polymerase III, epsilon subunit and related 3'-5' exonucleases. | Transfer protein Tra-like; COG0507 ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member. | 0.856 |
JNB_01505 | JNB_07399 | JNB_01505 | JNB_07399 | Hypothetical protein; COG0847 DNA polymerase III, epsilon subunit and related 3'-5' exonucleases. | COG0210 Superfamily I DNA and RNA helicases. | 0.899 |
JNB_01505 | JNB_13403 | JNB_01505 | JNB_13403 | Hypothetical protein; COG0847 DNA polymerase III, epsilon subunit and related 3'-5' exonucleases. | DNA polymerase III subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.949 |
JNB_01505 | JNB_13948 | JNB_01505 | JNB_13948 | Hypothetical protein; COG0847 DNA polymerase III, epsilon subunit and related 3'-5' exonucleases. | Putative replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity. Belongs to the helicase family. DnaB subfamily. | 0.409 |
JNB_01505 | polA | JNB_01505 | JNB_03775 | Hypothetical protein; COG0847 DNA polymerase III, epsilon subunit and related 3'-5' exonucleases. | Putative DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.907 |