Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
JNB_01640 | JNB_02460 | JNB_01640 | JNB_02460 | Hypothetical protein. | COG1862 Preprotein translocase subunit YajC. | 0.488 |
JNB_01640 | JNB_03495 | JNB_01640 | JNB_03495 | Hypothetical protein. | Triosephosphate isomerase; Involved in protein export. Participates in an early event of protein translocation; Belongs to the SecG family. | 0.533 |
JNB_01640 | JNB_13428 | JNB_01640 | JNB_13428 | Hypothetical protein. | Putative inner membrane protein translocase component YidC; COG0706 Preprotein translocase subunit YidC. | 0.527 |
JNB_01640 | ffh | JNB_01640 | JNB_19673 | Hypothetical protein. | Signal recognition particle protein; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Belongs to the GTP-binding SRP family. SRP54 subfamily. | 0.526 |
JNB_01640 | ftsY | JNB_01640 | JNB_19633 | Hypothetical protein. | Putative prokaryotic docking protein; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC). | 0.551 |
JNB_01640 | secA | JNB_01640 | JNB_18958 | Hypothetical protein. | Translocase; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane; Belongs to the SecA family. | 0.554 |
JNB_01640 | secD | JNB_01640 | JNB_02465 | Hypothetical protein. | SecD; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA. | 0.558 |
JNB_01640 | secE | JNB_01640 | JNB_08449 | Hypothetical protein. | Preprotein translocase SecE subunit; Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation. | 0.562 |
JNB_01640 | secF | JNB_01640 | JNB_02470 | Hypothetical protein. | Protein export protein SecF; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA. | 0.554 |
JNB_01640 | secY | JNB_01640 | JNB_08209 | Hypothetical protein. | Preprotein translocase SecY; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently. | 0.554 |
JNB_02460 | JNB_01640 | JNB_02460 | JNB_01640 | COG1862 Preprotein translocase subunit YajC. | Hypothetical protein. | 0.488 |
JNB_02460 | JNB_03495 | JNB_02460 | JNB_03495 | COG1862 Preprotein translocase subunit YajC. | Triosephosphate isomerase; Involved in protein export. Participates in an early event of protein translocation; Belongs to the SecG family. | 0.959 |
JNB_02460 | JNB_13428 | JNB_02460 | JNB_13428 | COG1862 Preprotein translocase subunit YajC. | Putative inner membrane protein translocase component YidC; COG0706 Preprotein translocase subunit YidC. | 0.868 |
JNB_02460 | ffh | JNB_02460 | JNB_19673 | COG1862 Preprotein translocase subunit YajC. | Signal recognition particle protein; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Belongs to the GTP-binding SRP family. SRP54 subfamily. | 0.952 |
JNB_02460 | ftsY | JNB_02460 | JNB_19633 | COG1862 Preprotein translocase subunit YajC. | Putative prokaryotic docking protein; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC). | 0.953 |
JNB_02460 | secA | JNB_02460 | JNB_18958 | COG1862 Preprotein translocase subunit YajC. | Translocase; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane; Belongs to the SecA family. | 0.952 |
JNB_02460 | secD | JNB_02460 | JNB_02465 | COG1862 Preprotein translocase subunit YajC. | SecD; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA. | 0.990 |
JNB_02460 | secE | JNB_02460 | JNB_08449 | COG1862 Preprotein translocase subunit YajC. | Preprotein translocase SecE subunit; Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation. | 0.958 |
JNB_02460 | secF | JNB_02460 | JNB_02470 | COG1862 Preprotein translocase subunit YajC. | Protein export protein SecF; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA. | 0.972 |
JNB_02460 | secY | JNB_02460 | JNB_08209 | COG1862 Preprotein translocase subunit YajC. | Preprotein translocase SecY; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently. | 0.947 |
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