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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
JNB_01705Hypothetical protein. (123 aa)    
Predicted Functional Partners:
JNB_01695
COG0500 SAM-dependent methyltransferases.
 
     0.643
JNB_01440
Putative membrane protein; Part of cytochrome c oxidase, its function is unknown. Belongs to the cytochrome c oxidase bacterial subunit CtaF family.
  
     0.547
JNB_01715
Hypothetical protein.
  
     0.540
dinB
DNA-directed DNA polymerase; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII.
       0.533
JNB_01470
Rieske iron-sulphur component of ubiQ-cytB reductase; COG0723 Rieske Fe-S protein.
  
     0.490
JNB_01475
COG2010 Cytochrome c, mono- and diheme variants.
  
     0.482
JNB_01805
Hypothetical protein.
  
     0.473
JNB_07659
COG1826 Sec-independent protein secretion pathway components.
  
     0.472
JNB_02010
Hypothetical protein.
  
     0.470
JNB_17193
Putative membrane protein; COG2919 Septum formation initiator.
 
     0.401
Your Current Organism:
Janibacter sp. HTCC2649
NCBI taxonomy Id: 313589
Other names: J. sp. HTCC2649
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