STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
JNB_03070Hypothetical protein; COG2887 RecB family exonuclease. (281 aa)    
Predicted Functional Partners:
JNB_07399
COG0210 Superfamily I DNA and RNA helicases.
   
  0.807
JNB_02390
COG1560 Lauroyl/myristoyl acyltransferase.
  
     0.576
JNB_07424
COG0210 Superfamily I DNA and RNA helicases.
 
 
 
0.559
JNB_07419
COG0210 Superfamily I DNA and RNA helicases; Belongs to the helicase family. UvrD subfamily.
 
 
 
0.540
JNB_02395
COG0438 Glycosyltransferase.
  
     0.513
JNB_00310
Hypothetical protein; COG0210 Superfamily I DNA and RNA helicases.
   
  0.509
JNB_17723
Putative ATP-dependent DNA helicase II; COG0210 Superfamily I DNA and RNA helicases.
   
  0.509
whiB-4
Putative transcription regulator; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA.
  
     0.499
JNB_03065
Putative integral membrane protein; COG0477 Permeases of the major facilitator superfamily.
       0.492
JNB_02400
Putative secreted protein.
  
     0.480
Your Current Organism:
Janibacter sp. HTCC2649
NCBI taxonomy Id: 313589
Other names: J. sp. HTCC2649
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.