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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
JNB_03080COG2047 Uncharacterized protein (ATP-grasp superfamily). (281 aa)    
Predicted Functional Partners:
JNB_03075
Hydrolase; COG0637 Predicted phosphatase/phosphohexomutase.
 
     0.710
rpoZ
DNA-directed RNA polymerase omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
 
     0.587
JNB_03055
MetH; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
     
 0.579
JNB_08499
Hypothetical protein; COG2030 Acyl dehydratase.
  
     0.548
JNB_03425
COG1612 Uncharacterized protein required for cytochrome oxidase assembly.
  
     0.544
JNB_01440
Putative membrane protein; Part of cytochrome c oxidase, its function is unknown. Belongs to the cytochrome c oxidase bacterial subunit CtaF family.
  
     0.465
prcB
Putative 20S proteasome beta-subunit; Component of the proteasome core, a large protease complex with broad specificity involved in protein degradation. Belongs to the peptidase T1B family.
  
 
   0.448
JNB_00545
Hypothetical protein; COG0353 Recombinational DNA repair protein (RecF pathway).
 
 
  
0.443
JNB_01475
COG2010 Cytochrome c, mono- and diheme variants.
  
     0.440
JNB_16734
Hypothetical protein; COG1846 Transcriptional regulators.
  
     0.439
Your Current Organism:
Janibacter sp. HTCC2649
NCBI taxonomy Id: 313589
Other names: J. sp. HTCC2649
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