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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
JNB_03705Hypothetical protein; COG0500 SAM-dependent methyltransferases. (221 aa)    
Predicted Functional Partners:
JNB_03700
Hypothetical protein.
     0.963
JNB_03710
COG0438 Glycosyltransferase.
 
     0.860
menA
1,4-dihydroxy-2-naphthoate octaprenyltransferase; Conversion of 1,4-dihydroxy-2-naphthoate (DHNA) to demethylmenaquinone (DMK); Belongs to the MenA family. Type 1 subfamily.
    
 0.770
JNB_03720
Hypothetical protein.
  
     0.757
JNB_03690
Probable conserved membrane protein; COG0008 Glutamyl- and glutaminyl-tRNA synthetases.
 
     0.752
JNB_06949
Putative oxidoreductase protein; COG0665 Glycine/D-amino acid oxidases (deaminating); Belongs to the GcvT family.
     
 0.713
JNB_19333
Putative dehydrogenase protein; COG0665 Glycine/D-amino acid oxidases (deaminating); Belongs to the GcvT family.
     
 0.713
JNB_03755
Putative membrane protein; COG1113 Gamma-aminobutyrate permease and related permeases.
 
     0.689
gcvP
Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.
     
 0.675
JNB_03765
Hypothetical protein; COG1593 TRAP-type C4-dicarboxylate transport system, large permease component.
 
     0.603
Your Current Organism:
Janibacter sp. HTCC2649
NCBI taxonomy Id: 313589
Other names: J. sp. HTCC2649
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