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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
vapCPlasmid stability protein StbB; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family. (139 aa)    
Predicted Functional Partners:
JNB_04070
COG4691 Plasmid stability protein.
 
 
 
 0.988
JNB_14618
Hypothetical protein; Antitoxin component of a type II toxin-antitoxin (TA) system.
   
 
 0.966
JNB_04060
Hypothetical protein; COG0262 Dihydrofolate reductase.
       0.752
JNB_04075
COG0454 Histone acetyltransferase HPA2 and related acetyltransferases.
 
     0.705
JNB_07914
Hypothetical protein.
 
   0.659
nusB
NusB antitermination factor; Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons.
       0.655
JNB_17873
Prevent-host-death protein; Antitoxin component of a type II toxin-antitoxin (TA) system.
 
 
   0.624
efp
Elongation factor P; Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase.
       0.617
JNB_10389
Hypothetical protein.
  
   0.489
JNB_17868
COG3744 Uncharacterized protein conserved in bacteria.
  
     0.483
Your Current Organism:
Janibacter sp. HTCC2649
NCBI taxonomy Id: 313589
Other names: J. sp. HTCC2649
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