STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
JNB_05505Polysaccharide deacetylase family protein; COG0726 Predicted xylanase/chitin deacetylase. (270 aa)    
Predicted Functional Partners:
JNB_05510
Hypothetical protein.
 
     0.929
JNB_05515
Protein-tyrosine kinase; COG0489 ATPases involved in chromosome partitioning.
 
   
 0.837
JNB_05390
Hypothetical protein; COG1178 ABC-type Fe3+ transport system, permease component.
  
     0.691
JNB_05525
ABC transporter, ATP-binding/permease protein; COG1132 ABC-type multidrug transport system, ATPase and permease components.
 
     0.689
JNB_05520
Putative galactosyltransferase; COG0438 Glycosyltransferase.
 
     0.618
JNB_05495
Hypothetical protein; COG3153 Predicted acetyltransferase.
  
     0.563
JNB_02600
Hypothetical protein; COG1215 Glycosyltransferases, probably involved in cell wall biogenesis.
  
 
  0.507
JNB_13688
Hypothetical protein; COG1215 Glycosyltransferases, probably involved in cell wall biogenesis.
  
 
  0.507
JNB_02580
COG0463 Glycosyltransferases involved in cell wall biogenesis.
  
 
  0.504
JNB_03725
COG0463 Glycosyltransferases involved in cell wall biogenesis.
  
 
  0.504
Your Current Organism:
Janibacter sp. HTCC2649
NCBI taxonomy Id: 313589
Other names: J. sp. HTCC2649
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.