STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
JNB_05575Probable dtdp-glucose 4,6-dehydratase transmembrane protein; COG1086 Predicted nucleoside-diphosphate sugar epimerases. (603 aa)    
Predicted Functional Partners:
JNB_05515
Protein-tyrosine kinase; COG0489 ATPases involved in chromosome partitioning.
 
 
 0.961
JNB_18028
Capsular polysaccharide synthesis enzyme CapF; COG0451 Nucleoside-diphosphate-sugar epimerases.
 
 
 0.943
JNB_18053
Putative aminotransferase; COG0399 Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis; Belongs to the DegT/DnrJ/EryC1 family.
 
 
 0.901
JNB_05570
Putative lipopolysaccharide biosynthesis protein; COG0677 UDP-N-acetyl-D-mannosaminuronate dehydrogenase; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family.
  
 
 0.899
JNB_05395
Hypothetical protein; COG0489 ATPases involved in chromosome partitioning.
 
 
 0.831
JNB_18063
Cell surface polysaccharide biosynthesis / Chain length determinant protein; COG3944 Capsular polysaccharide biosynthesis protein.
 
 
 0.808
JNB_18048
Probable glycosyl transferase transmembrane protein; COG2148 Sugar transferases involved in lipopolysaccharide synthesis.
 
 
 0.724
JNB_18548
Aspartate aminotransferase; COG0399 Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis; Belongs to the DegT/DnrJ/EryC1 family.
 
 
 0.724
JNB_01990
Putative UDP-N-acetylglucosamine transferase; COG1396 Predicted transcriptional regulators.
    
 0.706
glmU
Putative UDP-N-acetylglucosamine pyrophosphorylase; Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP-GlcNAc). The C- terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N- acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5-monophosphate (from uridine 5- triphosphate), a reaction catalyzed by the N-terminal domain.
    
 0.681
Your Current Organism:
Janibacter sp. HTCC2649
NCBI taxonomy Id: 313589
Other names: J. sp. HTCC2649
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