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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
JNB_05899Metalloprotease MEP1-like protein. (313 aa)    
Predicted Functional Partners:
ribA
3,4-dihydroxy-2-butanone-4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the GTP cyclohydrolase II family. In the N-terminal section; belongs to the DHBP synthase family.
  
 
  0.635
JNB_12988
Putative magnesium or manganese-dependent protein phosphatase; COG0631 Serine/threonine protein phosphatase.
  
  0.482
JNB_13193
Putative magnesium or manganese-dependent protein phosphatase; COG0631 Serine/threonine protein phosphatase.
  
  0.482
JNB_13503
COG0631 Serine/threonine protein phosphatase.
  
  0.482
tig
Trigger factor; Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase; Belongs to the FKBP-type PPIase family. Tig subfamily.
       0.464
JNB_05395
Hypothetical protein; COG0489 ATPases involved in chromosome partitioning.
    
   0.457
JNB_18063
Cell surface polysaccharide biosynthesis / Chain length determinant protein; COG3944 Capsular polysaccharide biosynthesis protein.
    
   0.457
JNB_01370
Esterase, PHB depolymerase; COG3509 Poly(3-hydroxybutyrate) depolymerase.
  
     0.452
JNB_06704
Putative cell division-related protein; COG1716 FOG: FHA domain.
   
   0.446
JNB_02645
Hypothetical protein; COG1716 FOG: FHA domain.
    
   0.408
Your Current Organism:
Janibacter sp. HTCC2649
NCBI taxonomy Id: 313589
Other names: J. sp. HTCC2649
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