STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
JNB_06839COG2120 Uncharacterized proteins, LmbE homologs. (909 aa)    
Predicted Functional Partners:
JNB_06854
Sugar ABC transporter substrate-binding protein; COG1653 ABC-type sugar transport system, periplasmic component.
 
     0.876
JNB_06849
Hypothetical protein; COG1175 ABC-type sugar transport systems, permease components.
 
     0.731
JNB_06859
Putative carbohydrate kinase; COG0524 Sugar kinases, ribokinase family.
 
  
  0.701
JNB_06844
Probable ABC transporter permease protein; COG0395 ABC-type sugar transport system, permease component.
 
     0.665
JNB_06869
COG1486 Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases.
 
     0.645
JNB_06834
Possible MarR-transcriptional regulator; COG1846 Transcriptional regulators.
       0.605
JNB_06864
COG1349 Transcriptional regulators of sugar metabolism.
 
     0.461
JNB_03570
Hypothetical protein; COG3547 Transposase and inactivated derivatives.
  
     0.437
JNB_12768
Hypothetical protein; COG3547 Transposase and inactivated derivatives.
  
     0.435
JNB_19263
Hypothetical protein; COG3547 Transposase and inactivated derivatives.
  
     0.435
Your Current Organism:
Janibacter sp. HTCC2649
NCBI taxonomy Id: 313589
Other names: J. sp. HTCC2649
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.