Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
JNB_07294Zinc protease; COG0612 Predicted Zn-dependent peptidases. (428 aa)    
Predicted Functional Partners:
JNB_07289
Putative protease; COG0612 Predicted Zn-dependent peptidases.
     0.991
atpA
ATP synthase subunit A; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit.
   
 0.949
JNB_09004
Putative NADH dehydrogenase I chain F; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Belongs to the complex I 51 kDa subunit family.
   
  0.937
atpG
ATP synthase, gamma chain; Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex.
   
 0.916
JNB_01480
COG1845 Heme/copper-type cytochrome/quinol oxidase, subunit 3.
   
  0.914
JNB_01470
Rieske iron-sulphur component of ubiQ-cytB reductase; COG0723 Rieske Fe-S protein.
   
 0.912
JNB_03535
Putative iron sulphur protein; COG2146 Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases.
   
 0.912
JNB_01430
COG1622 Heme/copper-type cytochrome/quinol oxidases, subunit 2.
   
 0.911
JNB_01465
COG1290 Cytochrome b subunit of the bc complex.
    
 0.911
JNB_01435
Cytochrome C oxidase subunit I; Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B.
   
 0.909
Your Current Organism:
Janibacter sp. HTCC2649
NCBI taxonomy Id: 313589
Other names: J. sp. HTCC2649
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