JNB_07514 protein (Janibacter sp. HTCC2649) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

JNB_07514

Hypothetical protein. (287 aa)

Predicted Functional Partners:

JNB_07509

0.773

JNB_14813

0.749

JNB_05530

0.743

JNB_10814

0.726

JNB_02705

0.702

JNB_09589

0.691

JNB_15303

0.666

JNB_11254

0.665

JNB_03970

0.663

JNB_13268

0.659

Your Current Organism:

Janibacter sp. HTCC2649

NCBI taxonomy Id: 313589
Other names: J. sp. HTCC2649

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
JNB_02705	JNB_03970	COG2334 Putative homoserine kinase type II (protein kinase fold).	Large Ala/Glu-rich protein; COG0532 Translation initiation factor 2 (IF-2; GTPase).	0.437
JNB_02705	JNB_05530	COG2334 Putative homoserine kinase type II (protein kinase fold).	Sugar metabolism cluster protein; COG0500 SAM-dependent methyltransferases; similar to quinone/porphyrin-methyltransferase (EC 2.1.1.-).	0.652
JNB_02705	JNB_07514	COG2334 Putative homoserine kinase type II (protein kinase fold).	Hypothetical protein.	0.702
JNB_02705	JNB_09589	COG2334 Putative homoserine kinase type II (protein kinase fold).	Putative secreted protein.	0.453
JNB_02705	JNB_10814	COG2334 Putative homoserine kinase type II (protein kinase fold).	Hypothetical protein; COG0552 Signal recognition particle GTPase.	0.754
JNB_02705	JNB_11254	COG2334 Putative homoserine kinase type II (protein kinase fold).	Hypothetical protein.	0.636
JNB_02705	JNB_13268	COG2334 Putative homoserine kinase type II (protein kinase fold).	Hypothetical protein.	0.636
JNB_02705	JNB_14813	COG2334 Putative homoserine kinase type II (protein kinase fold).	Hypothetical protein.	0.750
JNB_02705	JNB_15303	COG2334 Putative homoserine kinase type II (protein kinase fold).	Hypothetical protein.	0.562
JNB_03970	JNB_02705	Large Ala/Glu-rich protein; COG0532 Translation initiation factor 2 (IF-2; GTPase).	COG2334 Putative homoserine kinase type II (protein kinase fold).	0.437
JNB_03970	JNB_05530	Large Ala/Glu-rich protein; COG0532 Translation initiation factor 2 (IF-2; GTPase).	Sugar metabolism cluster protein; COG0500 SAM-dependent methyltransferases; similar to quinone/porphyrin-methyltransferase (EC 2.1.1.-).	0.693
JNB_03970	JNB_07514	Large Ala/Glu-rich protein; COG0532 Translation initiation factor 2 (IF-2; GTPase).	Hypothetical protein.	0.663
JNB_03970	JNB_09589	Large Ala/Glu-rich protein; COG0532 Translation initiation factor 2 (IF-2; GTPase).	Putative secreted protein.	0.676
JNB_03970	JNB_10814	Large Ala/Glu-rich protein; COG0532 Translation initiation factor 2 (IF-2; GTPase).	Hypothetical protein; COG0552 Signal recognition particle GTPase.	0.629
JNB_03970	JNB_11254	Large Ala/Glu-rich protein; COG0532 Translation initiation factor 2 (IF-2; GTPase).	Hypothetical protein.	0.543
JNB_03970	JNB_13268	Large Ala/Glu-rich protein; COG0532 Translation initiation factor 2 (IF-2; GTPase).	Hypothetical protein.	0.496
JNB_03970	JNB_14813	Large Ala/Glu-rich protein; COG0532 Translation initiation factor 2 (IF-2; GTPase).	Hypothetical protein.	0.668
JNB_03970	JNB_15303	Large Ala/Glu-rich protein; COG0532 Translation initiation factor 2 (IF-2; GTPase).	Hypothetical protein.	0.657
JNB_05530	JNB_02705	Sugar metabolism cluster protein; COG0500 SAM-dependent methyltransferases; similar to quinone/porphyrin-methyltransferase (EC 2.1.1.-).	COG2334 Putative homoserine kinase type II (protein kinase fold).	0.652
JNB_05530	JNB_03970	Sugar metabolism cluster protein; COG0500 SAM-dependent methyltransferases; similar to quinone/porphyrin-methyltransferase (EC 2.1.1.-).	Large Ala/Glu-rich protein; COG0532 Translation initiation factor 2 (IF-2; GTPase).	0.693