Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
JNB_08049COG0640 Predicted transcriptional regulators. (202 aa)    
Predicted Functional Partners:
JNB_08054
Hypothetical protein; COG0477 Permeases of the major facilitator superfamily.
 
     0.936
JNB_08059
Monooxygenase, flavin-binding family protein; COG2072 Predicted flavoprotein involved in K+ transport.
       0.639
JNB_15608
Hypothetical protein.
  
     0.571
JNB_10779
Hypothetical protein.
  
     0.473
JNB_10319
Hypothetical protein.
  
     0.472
JNB_04485
Methionine aminopeptidase.
  
     0.469
JNB_04755
DNA primase.
  
     0.468
JNB_02890
COG0258 5'-3' exonuclease (including N-terminal domain of PolI).
  
     0.464
rplM
50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.
       0.444
JNB_19053
Hypothetical protein.
  
     0.432
Your Current Organism:
Janibacter sp. HTCC2649
NCBI taxonomy Id: 313589
Other names: J. sp. HTCC2649
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