Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
JNB_04610 | JNB_08889 | JNB_04610 | JNB_08889 | COG0331 (acyl-carrier-protein) S-malonyltransferase. | COG1020 Non-ribosomal peptide synthetase modules and related proteins. | 0.898 |
JNB_04610 | JNB_12793 | JNB_04610 | JNB_12793 | COG0331 (acyl-carrier-protein) S-malonyltransferase. | AcrA1. | 0.816 |
JNB_04610 | JNB_18028 | JNB_04610 | JNB_18028 | COG0331 (acyl-carrier-protein) S-malonyltransferase. | Capsular polysaccharide synthesis enzyme CapF; COG0451 Nucleoside-diphosphate-sugar epimerases. | 0.566 |
JNB_04610 | acpP | JNB_04610 | JNB_04620 | COG0331 (acyl-carrier-protein) S-malonyltransferase. | Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis; Belongs to the acyl carrier protein (ACP) family. | 0.999 |
JNB_04610 | fabH | JNB_04610 | JNB_04615 | COG0331 (acyl-carrier-protein) S-malonyltransferase. | 3-oxoacyl-(acyl carrier protein) synthase; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched-chain and/or straight-chain of fatty acids; Belongs to the thiolase-like superfamily. FabH family. | 0.999 |
JNB_04610 | hemL | JNB_04610 | JNB_09259 | COG0331 (acyl-carrier-protein) S-malonyltransferase. | COG0001 Glutamate-1-semialdehyde aminotransferase. | 0.424 |
JNB_08884 | JNB_08889 | JNB_08884 | JNB_08889 | COG0308 Aminopeptidase N. | COG1020 Non-ribosomal peptide synthetase modules and related proteins. | 0.965 |
JNB_08889 | JNB_04610 | JNB_08889 | JNB_04610 | COG1020 Non-ribosomal peptide synthetase modules and related proteins. | COG0331 (acyl-carrier-protein) S-malonyltransferase. | 0.898 |
JNB_08889 | JNB_08884 | JNB_08889 | JNB_08884 | COG1020 Non-ribosomal peptide synthetase modules and related proteins. | COG0308 Aminopeptidase N. | 0.965 |
JNB_08889 | JNB_11289 | JNB_08889 | JNB_11289 | COG1020 Non-ribosomal peptide synthetase modules and related proteins. | COG1045 Serine acetyltransferase. | 0.882 |
JNB_08889 | JNB_12793 | JNB_08889 | JNB_12793 | COG1020 Non-ribosomal peptide synthetase modules and related proteins. | AcrA1. | 0.847 |
JNB_08889 | JNB_18028 | JNB_08889 | JNB_18028 | COG1020 Non-ribosomal peptide synthetase modules and related proteins. | Capsular polysaccharide synthesis enzyme CapF; COG0451 Nucleoside-diphosphate-sugar epimerases. | 0.889 |
JNB_08889 | JNB_18053 | JNB_08889 | JNB_18053 | COG1020 Non-ribosomal peptide synthetase modules and related proteins. | Putative aminotransferase; COG0399 Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis; Belongs to the DegT/DnrJ/EryC1 family. | 0.944 |
JNB_08889 | JNB_18548 | JNB_08889 | JNB_18548 | COG1020 Non-ribosomal peptide synthetase modules and related proteins. | Aspartate aminotransferase; COG0399 Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis; Belongs to the DegT/DnrJ/EryC1 family. | 0.944 |
JNB_08889 | acpP | JNB_08889 | JNB_04620 | COG1020 Non-ribosomal peptide synthetase modules and related proteins. | Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis; Belongs to the acyl carrier protein (ACP) family. | 0.996 |
JNB_08889 | fabH | JNB_08889 | JNB_04615 | COG1020 Non-ribosomal peptide synthetase modules and related proteins. | 3-oxoacyl-(acyl carrier protein) synthase; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched-chain and/or straight-chain of fatty acids; Belongs to the thiolase-like superfamily. FabH family. | 0.887 |
JNB_08889 | hemL | JNB_08889 | JNB_09259 | COG1020 Non-ribosomal peptide synthetase modules and related proteins. | COG0001 Glutamate-1-semialdehyde aminotransferase. | 0.949 |
JNB_11289 | JNB_08889 | JNB_11289 | JNB_08889 | COG1045 Serine acetyltransferase. | COG1020 Non-ribosomal peptide synthetase modules and related proteins. | 0.882 |
JNB_11289 | JNB_18028 | JNB_11289 | JNB_18028 | COG1045 Serine acetyltransferase. | Capsular polysaccharide synthesis enzyme CapF; COG0451 Nucleoside-diphosphate-sugar epimerases. | 0.460 |
JNB_11289 | JNB_18053 | JNB_11289 | JNB_18053 | COG1045 Serine acetyltransferase. | Putative aminotransferase; COG0399 Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis; Belongs to the DegT/DnrJ/EryC1 family. | 0.493 |
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