STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
JNB_11019COG1609 Transcriptional regulators. (392 aa)    
Predicted Functional Partners:
JNB_03815
Putative glutamate synthase (NADPH) large subunit; COG0067 Glutamate synthase domain 1.
   
 
 0.957
JNB_11024
Hypothetical protein; COG1082 Sugar phosphate isomerases/epimerases.
 
  
 0.841
JNB_05934
COG0698 Ribose 5-phosphate isomerase RpiB.
  
 
 0.816
JNB_11014
Probable solute-binding lipoprotein; COG1653 ABC-type sugar transport system, periplasmic component.
 
   
 0.806
JNB_12389
Tagatose 6-phosphate kinase; COG1105 Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB).
  
  
 0.803
JNB_03460
COG0021 Transketolase; Belongs to the transketolase family.
  
 0.791
JNB_05884
Transcriptional regulator, sugar-binding, putative; COG1609 Transcriptional regulators.
  
     0.768
JNB_06194
COG1609 Transcriptional regulators.
  
     0.768
JNB_11229
COG1609 Transcriptional regulators.
  
     0.764
JNB_13838
Transcriptional regulator, LacI family protein; COG1609 Transcriptional regulators.
  
     0.762
Your Current Organism:
Janibacter sp. HTCC2649
NCBI taxonomy Id: 313589
Other names: J. sp. HTCC2649
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.