STRINGSTRING
JNB_12788 protein (Janibacter sp. HTCC2649) - STRING interaction network
"JNB_12788" - Base-excision DNA repair protein in Janibacter sp. HTCC2649
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
JNB_12788Base-excision DNA repair protein (213 aa)    
Predicted Functional Partners:
JNB_11194
Putative methylated-DNA--protein-cysteine S-methyltransferase (178 aa)
 
 
  0.838
JNB_18078
Exodeoxyribonuclease III (269 aa)
   
  0.800
JNB_15533
AP endonuclease, family 1-Exodeoxyribonuclease III xth (262 aa)
   
  0.800
JNB_02775
Putative transcriptional regulator (155 aa)
   
 
  0.749
JNB_03775
DNA polymerase (889 aa)
   
 
  0.712
JNB_11939
Putative DNA-methyltransferase (184 aa)
 
 
  0.663
recA
Recombinase A ; Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage (354 aa)
     
 
  0.606
JNB_19258
Methylated-DNA--protein-cysteine methyltransferase (190 aa)
   
 
  0.578
JNB_12798
Hypothetical short chain dehydrogenase (217 aa)
   
        0.565
JNB_02890
Putative 5’-3’ exonuclease (333 aa)
   
 
  0.537
Your Current Organism:
Janibacter sp. HTCC2649
NCBI taxonomy Id: 313589
Other names: J. sp. HTCC2649, Janibacter, Janibacter HTCC2649, Janibacter sp. HTCC2649
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