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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
disAPutative DNA-binding protein; Has also diadenylate cyclase activity, catalyzing the condensation of 2 ATP molecules into cyclic di-AMP (c-di-AMP). c-di-AMP likely acts as a signaling molecule that may couple DNA integrity with a cellular process. (360 aa)    
Predicted Functional Partners:
radA
Putative DNA repair protein; DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function.
  
  
 0.961
JNB_13643
Putative adenine glycosylase; COG1194 A/G-specific DNA glycosylase.
       0.796
JNB_13648
Putative integral membrane protein.
       0.733
JNB_07424
COG0210 Superfamily I DNA and RNA helicases.
   
    0.684
JNB_10389
Hypothetical protein.
  
     0.634
JNB_18093
Putative secreted protein; COG1514 2'-5' RNA ligase.
  
     0.454
JNB_16399
Putative 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; COG1211 4-diphosphocytidyl-2-methyl-D-erithritol synthase; Belongs to the IspD/TarI cytidylyltransferase family. IspD subfamily.
  
    0.441
JNB_02630
Putative membrane protein; COG3856 Uncharacterized conserved protein (small basic protein).
  
     0.424
JNB_13228
COG3879 Uncharacterized protein conserved in bacteria.
  
     0.410
JNB_19843
COG0739 Membrane proteins related to metalloendopeptidases.
     
 0.410
Your Current Organism:
Janibacter sp. HTCC2649
NCBI taxonomy Id: 313589
Other names: J. sp. HTCC2649
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