STRINGSTRING
JNB_18878 protein (Janibacter sp. HTCC2649) - STRING interaction network
"JNB_18878" - Probable secretion system protein TadC in Janibacter sp. HTCC2649
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
JNB_18878Probable secretion system protein TadC (301 aa)    
Predicted Functional Partners:
JNB_18868
Flp pilus assembly protein TadA (454 aa)
 
   
  0.986
JNB_18863
Probable chromosome partitioning ATPase (388 aa)
 
     
  0.964
JNB_18873
Putative membrane protein (654 aa)
 
   
0.935
JNB_09769
Putative conjugal transfer protein (441 aa)
 
   
  0.908
JNB_06654
Putative type II/type IV pathway secretion protein (409 aa)
 
   
  0.908
JNB_00780
Secretion system protein (470 aa)
 
   
  0.907
JNB_18858
Uncharacterized protein (263 aa)
              0.880
JNB_18883
Lipopolysaccharide modification acyltransferase (349 aa)
              0.669
JNB_18853
Uncharacterized protein (415 aa)
              0.641
JNB_18848
Uncharacterized protein (129 aa)
              0.638
Your Current Organism:
Janibacter sp. HTCC2649
NCBI taxonomy Id: 313589
Other names: J. sp. HTCC2649, Janibacter, Janibacter HTCC2649, Janibacter sp. HTCC2649
Server load: low (8%) [HD]