STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
polADNA polymerase I - 3'-5' exonuclease and polymerase domains. (949 aa)    
Predicted Functional Partners:
dnaN1
DNA polymerase sliding clamp subunit (PCNA homolog).
 
 0.999
recA
RecA/RadA recombinase.
 
 0.997
EAQ39589.1
Predicted 3'-5' exonuclease related to the exonuclease domain of PolB.
   
 0.941
EAQ39401.1
Hypothetical protein.
   
 0.939
EAQ39530.1
ATP-dependent DNA ligase.
  
 0.902
mutS3
Mismatch repair ATPase (MutS family).
  
 0.867
mutL
DNA mismatch repair enzyme (predicted ATPase).
  
 0.857
mutS5
Mismatch repair ATPase (MutS family).
   
 0.849
glyS
Glycyl-tRNA synthetase (class II).
   
 0.842
topA
Topoisomerase IA.
 
 0.833
Your Current Organism:
Dokdonia sp. MED134
NCBI taxonomy Id: 313590
Other names: Cellulophaga sp. MED134, D. sp. MED134, Dokdonia donghaensis MED134
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.