STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAQ38689.1Polyprenyl synthetase; Geranylgeranyl pyrophosphate synthase. (325 aa)    
Predicted Functional Partners:
uppS
Undecaprenyl pyrophosphate synthase.
 
 
 0.963
EAQ39310.1
Polyprenyl synthetase; Geranylgeranyl pyrophosphate synthase.
  
  
 
0.926
crtB
Phytoene/squalene synthetase.
  
 0.913
menA
1,4-dihydroxy-2-naphthoateoctaprenyltransferase.
    
 0.830
EAQ38190.1
UbiA prenyltransferase family protein; 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases.
  
 
 0.829
ndk
Nucleoside diphosphate kinase.
 
 
 0.556
EAQ38688.1
Hypothetical protein.
       0.532
hemC
Porphobilinogen deaminase.
 
  
 0.474
rplO
Ribosomal protein L15.
  
    0.467
EAQ37797.1
Glycosyltransferases involved in cell wall biogenesis.
  
 
 0.461
Your Current Organism:
Dokdonia sp. MED134
NCBI taxonomy Id: 313590
Other names: Cellulophaga sp. MED134, D. sp. MED134, Dokdonia donghaensis MED134
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