STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rpmG50S ribosomal protein L33. (60 aa)    
Predicted Functional Partners:
rpmB
Ribosomal protein L28.
  
 
 0.998
rplU
Ribosomal protein L21.
   
 
 0.991
rplL
Ribosomal protein L7/L12.
  
 
 0.991
rpsR
Ribosomal protein S18.
  
 
 0.991
rplQ
Ribosomal protein L17.
 
 
 0.991
rpsI
Ribosomal protein S9.
  
 
 0.990
rplM
Ribosomal protein L13.
  
 
 0.990
rpmA
Ribosomal protein L27.
  
 
 0.990
rplJ
Ribosomal protein L10.
  
 
 0.990
rpsJ
Ribosomal protein S10.
  
 
 0.990
Your Current Organism:
Dokdonia sp. MED134
NCBI taxonomy Id: 313590
Other names: Cellulophaga sp. MED134, D. sp. MED134, Dokdonia donghaensis MED134
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.