STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rpoBDNA-directed RNA polymerase, beta subunit/140 kD subunit. (1273 aa)    
Predicted Functional Partners:
rplK
Ribosomal protein L11.
 
 0.999
rpoC
DNA-directed RNA polymerase, beta' subunit/160 kD subunit.
 0.999
rplL
Ribosomal protein L7/L12.
 
 0.997
rpoA
DNA-directed RNA polymerase, alpha subunit/40 kD subunit.
 
 0.997
nusA
Transcription elongation factor.
 
 0.992
rpoZ
DNA-directed RNA polymerase, omega subunit.
  
 0.988
rplA
Ribosomal protein L1.
 
 0.987
rplF
Ribosomal protein L6P/L9E.
 
 
 0.986
nusG
Transcriptional antitermination factor NusG; Transcription antiterminator.
 
 0.985
rplJ
Ribosomal protein L10.
 
 0.978
Your Current Organism:
Dokdonia sp. MED134
NCBI taxonomy Id: 313590
Other names: Cellulophaga sp. MED134, D. sp. MED134, Dokdonia donghaensis MED134
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.