STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAQ38821.1Regulatory helix-turn-helix protein, AraC family; AraC-type DNA-binding domain-containing proteins. (338 aa)    
Predicted Functional Partners:
EAQ38818.1
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain.
  
    0.633
EAQ38816.1
Two-component system sensor histidine kinase; Methylase of chemotaxis methyl-accepting proteins.
       0.631
EAQ38817.2
Two-component system sensor histidine kinase; Bacteriophytochrome (light-regulated signal transduction histidine kinase).
       0.631
EAQ38819.1
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain.
       0.631
EAQ38820.1
Heme oxygenase.
       0.631
EAQ39889.1
Transcription regulator, AraC family; AraC-type DNA-binding domain-containing proteins.
  
     0.482
EAQ39391.1
Transcription regulator, AraC family; AraC-type DNA-binding domain-containing proteins.
  
     0.472
EAQ40453.1
Transcription regulator, AraC family; AraC-type DNA-binding domain-containing proteins.
  
     0.402
Your Current Organism:
Dokdonia sp. MED134
NCBI taxonomy Id: 313590
Other names: Cellulophaga sp. MED134, D. sp. MED134, Dokdonia donghaensis MED134
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