STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAQ38337.1Organic solvent tolerance protein OstA. (611 aa)    
Predicted Functional Partners:
lepB
Signal peptidase I.
 
   
 0.752
EAQ40509.1
Hypothetical protein.
  
     0.692
AIN49953.1
Hypothetical protein; FOG: TPR repeat.
 
  
 0.659
EAQ38780.1
Hypothetical protein.
  
     0.628
EAQ38692.3
Outer membrane protein/protective antigen OMA87.
  
  
 0.618
fur3
Ferric uptake regulator family protein; Fe2+/Zn2+ uptake regulation proteins.
       0.610
EAQ37706.1
Hypothetical protein.
  
     0.588
EAQ39080.2
Hypothetical protein.
 
    0.587
EAQ38717.1
Hypothetical protein.
  
    0.570
purA
Adenylosuccinate synthase.
  
    0.569
Your Current Organism:
Dokdonia sp. MED134
NCBI taxonomy Id: 313590
Other names: Cellulophaga sp. MED134, D. sp. MED134, Dokdonia donghaensis MED134
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.