STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAQ39921.1Uncharacterized proteins, LmbE homologs. (238 aa)    
Predicted Functional Partners:
EAQ38396.2
Glycosyltransferase.
 
 
 0.878
EAQ38094.1
Uncharacterized protein conserved in bacteria.
 
  
 0.877
EAQ39557.1
Hypothetical protein.
  
    0.620
EAQ39920.1
Cys/Met metabolism PLP-dependent enzyme; Cystathionine beta-lyases/cystathionine gamma- synthases.
       0.618
gldC
Gliding motility protein GldC.
  
     0.509
EAQ38220.1
Hypothetical protein.
  
     0.480
EAQ38394.1
Hypothetical protein.
  
     0.455
EAQ40120.1
Hypothetical protein.
  
   
 0.449
EAQ39916.1
Acetyltransferase (GNAT) family protein; Histone acetyltransferase HPA2 and related acetyltransferases.
       0.438
EAQ39915.1
Predicted Zn-dependent hydrolases of the beta- lactamase fold.
       0.423
Your Current Organism:
Dokdonia sp. MED134
NCBI taxonomy Id: 313590
Other names: Cellulophaga sp. MED134, D. sp. MED134, Dokdonia donghaensis MED134
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.