STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAQ39961.1DJ-1/PfpI family protein; Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain. (251 aa)    
Predicted Functional Partners:
EAQ39960.1
Haloacid dehalogenase-like hydrolase; Predicted hydrolase (HAD superfamily).
  
    0.778
EAQ39959.1
ArsC family protein; Arsenate reductase and related proteins, glutaredoxin family.
       0.773
EAQ39958.1
Hypothetical protein.
       0.701
EAQ39962.1
Multidrug resistance protein; Sugar phosphate permease.
       0.669
EAQ38518.1
Metallo-beta-lactamase superfamily protein; Zn-dependent hydrolases, including glyoxylases.
  
     0.553
rpoD1
DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32).
   
 
 0.456
rpoD3
RNA polymerase sigma-70 factor RpoD; DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32).
   
 
 0.456
EAQ38352.1
Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain.
 
 
 0.439
EAQ38266.1
Predicted amidohydrolase.
  
     0.406
Your Current Organism:
Dokdonia sp. MED134
NCBI taxonomy Id: 313590
Other names: Cellulophaga sp. MED134, D. sp. MED134, Dokdonia donghaensis MED134
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